Tomviz

Introduction

The Tomviz environment provides users with a graphical tool for the processing, visualization, and analysis of tomography and related volumetric datasets. Tomviz facilitates intuitive workflows, enabling rapid visualization, segmentation, and quantitative analysis.

Environment configuration

Installation directories

• Tomviz is installed in /opt/tomviz/.
• Essential dependencies and libraries are pre-configured and automatically loaded upon environment startup.

Usage example

Launch Tomviz by clicking on the icon in the Ubuntu application launcher:

It is also possible to launch the program from the terminal, using the following command:

LD_LIBRARY_PATH=/opt/tomviz/lib:$LD_LIBRARY_PATH \
LD_PRELOAD=/opt/tomviz/lib/libffi.so.6 \
/opt/tomviz/bin/tomviz

Version history

Version 0

• Initial installation of Tomviz 1.10.0

References

1. Tomviz page: https://tomviz.org/
2. Tomviz license: https://tomviz.org/licensing/
3. Citation: Schwartz, J., Harris, C., Pietryga, J. et al. Real-time 3D analysis during electron tomography using tomviz. Nat Commun 13, 4458 (2022). https://doi.org/10.1038/s41467-022-32046-0