--- title: "Library" url: "https://help.dectris.cloud/en/article/library" language: "en" last_updated: "2026-09-01T17:06:39.599Z" --- # Library D.LAB Public Library DECTRIS D.LAB · Public library # Everything here is ready to run. The public library is a shared catalogue of scientific software environments and job templates, maintained by DECTRIS application scientists and by the D.LAB community. Nothing needs installing, compiling or version-matching — pick one, point it at your data, choose a node, and go. Every environment can be cloned and extended; every template can be adapted into a workflow of your own. **54**Software environments **35**Job templates **6**Technique families **0**Installation steps [cryo-EM & cryo-ET21](https://help.dectris.cloud/en/article/library#fam-cryo) [Crystallography25](https://help.dectris.cloud/en/article/library#fam-xtal) [Diffraction & 4D-STEM9](https://help.dectris.cloud/en/article/library#fam-diff) [Imaging & visualization7](https://help.dectris.cloud/en/article/library#fam-imag) [Coherent imaging4](https://help.dectris.cloud/en/article/library#fam-coh) [Computing & general23](https://help.dectris.cloud/en/article/library#fam-comp) **Environments** are containerised, versioned software stacks. Launch one as an interactive session, or use it as the basis for a job. Older versions stay available, so past work reruns unchanged. **Job templates** are parameterised, ready-to-run workflows. Each is bound to a specific environment version, so a template you run today gives the same result a year from now. ## cryo-EM & cryo-ET 13 environments · 8 job templates Single-particle analysis, tomogram alignment, subtomogram averaging and membrane segmentation. The GPU-heavy stacks are already compiled and CUDA-matched. ### Environments 13 AR ### AreTomo3 Fabian Eisenstein v0 cryo-ETOpen source Base image ubuntu:24.04 CE ### CCP-EM Doppio Fabian Eisenstein v1 cryo-EMOpen source Base image ubuntu:24.04 CI ### cisTEM Fabian Eisenstein v0 cryo-EMOpen source Base image ubuntu:24.04 CR ### CryoSPARC Fabian Eisenstein v6 cryo-EMSPA Base image ubuntu:24.04 CT ### CryoSPARC Tutorial Fabian Eisenstein v1 cryo-EMSPATutorial Base image ubuntu:24.04 IM ### IMOD Fabian Eisenstein v0 cryo-ETOpen source Base image ubuntu:24.04 ME ### MemBrain Fabian Eisenstein v2 cryo-ETSegmentationOpen source Base image ubuntu:24.04 MO ### MotionCor3 Fabian Eisenstein v0 cryo-EMOpen source Base image ubuntu:24.04 RE ### RELION-5.0 Fabian Eisenstein v3 cryo-EMSPAOpen source Base image ubuntu:24.04 RT ### RELION-5.0 --tomo Fabian Eisenstein v1 cryo-ETSTAOpen source Base image ubuntu:24.04 SC ### Scipion 3 Fabian Eisenstein v0 cryo-EMcryo-ETOpen source Base image ubuntu:24.04 WR ### WarpM + RELION-4 + IMOD Fabian Eisenstein v0 cryo-ETSTAOpen source Base image ubuntu:24.04 WR ### WarpM + RELION-5 + IMOD Fabian Eisenstein v2 cryo-ETSTAOpen source Base image ubuntu:24.04 ### Job templates 8 AR ### AreTomo3 Fabian Eisenstein v7 cryo-ETTomogram alignment Environment AreTomo3 v0 CG ### Calculate Gain Reference Fabian Eisenstein v2 cryo-EMPreprocessing Environment RELION-5.0 v3 CP ### CryoSPARC — Preprocessing Fabian Eisenstein v3 cryo-EMSPA Environment CryoSPARC v5 CW ### CryoSPARC — Workflow with Reference Fabian Eisenstein v3 cryo-EMSPA Environment CryoSPARC v5 MS ### MemBrain Segmentation Fabian Eisenstein v3 cryo-ETSegmentationGPU Environment MemBrain v2 MO ### ModelAngelo Fabian Eisenstein v0 cryo-EMModel buildingGPU Environment RELION-5.0 v0 MW ### ModelAngelo with Sequence Fabian Eisenstein v1 cryo-EMModel buildingGPU Environment RELION-5.0 v2 RP ### RELION — Preprocessing Fabian Eisenstein v0 cryo-EMPreprocessing Environment CCP-EM Doppio v1 ## Crystallography 11 environments · 14 job templates Macromolecular, serial and small-molecule crystallography — indexing, integration, phasing, refinement and model building, in both GUI and command-line form. ### Environments 11 CW ### CCP4 Workshop — AsCA 2025 Ludmila Leroy v0 MXWorkshop Base image ubuntu:24.04 CX ### CCP4 & XDS & PyMOL — command line Camilla Larsen v5 MX Base image ubuntu:24.04 CX ### CCP4 & XDS & PyMOL — GUI Ludmila Leroy v9 MX Base image ubuntu:24.04 CR ### CrystFEL Thomas White v10 Serial crystallographyOpen source Base image ubuntu:24.04 CS ### crystfel-sx Camilla Larsen v4 SXOpen source Base image ubuntu:22.04 DI ### DIALS Camilla Larsen v1 MXOpen source Base image ubuntu:24.04 FD ### Fast DP — fast processing with XDS Camilla Larsen v1 MXOpen source Base image ubuntu:24.04 OL ### Olex2 Fabian Eisenstein v10 Small moleculeOpen source Base image ubuntu:22.04 OD ### Olex2 & DIALS Oliver Harder v0 Small moleculeOpen source Base image ubuntu:24.04 WE ### WS ED Oliver Harder v4 MXOpen source Base image ubuntu:24.04 XD ### XDS Camilla Larsen v9 MXOpen source Base image ubuntu:24.04 ### Job templates 14 CS ### Coot script example Camilla Larsen v0 MXModel building Environment CCP4 & XDS & PyMOL GUI v9 CI ### CrystFEL indexamajig Camilla Larsen v0 Serial crystallographyIndexing Environment crystfel-sx v4 CL ### CrystFEL list\_events Camilla Larsen v0 Serial crystallography Environment crystfel-sx v4 DE ### DIALS example job Camilla Larsen v1 MXIntegration Environment DIALS v1 DM ### DIALS Macro Molecule Tutorial Ludmila Leroy v2 MXTutorial Environment DIALS v1 DS ### DIALS Small Molecule Tutorial Ludmila Leroy v2 Small moleculeTutorial Environment DIALS v1 FD ### Fast DP job Camilla Larsen v0 MXAutomated processing Environment Fast DP v1 MR ### Molecular Replacement MOLREP Ludmila Leroy v1 MXPhasing Environment CCP4 & XDS & PyMOL CLI v3 PX ### PRETTY XDS Ludmila Leroy v1 MXReporting Environment XDS v1 RE ### REFMAC5 example job Camilla Larsen v4 MXRefinement Environment CCP4 & XDS & PyMOL CLI v5 SM ### Sequential MOLREP Camilla Larsen v0 MXPhasingBatch Environment CCP4 & XDS & PyMOL CLI v5 SX ### Simple XDS\_PAR Camilla Larsen v4 MXIntegration Environment XDS v9 XP ### xds\_par & generate\_XDS.INP Camilla Larsen v2 MXIntegration Environment XDS v9 XE ### xia2 example job Camilla Larsen v1 MXAutomated processing Environment CCP4 & XDS & PyMOL CLI v5 ## Diffraction & 4D-STEM 6 environments · 3 job templates Scanning diffraction, electron crystallography and powder XRD, including the DECTRIS 4D-STEM reconstruction stack. ### Environments 6 4S ### 4D-STEM DECTRIS Ludmila Leroy v11 4D-STEM Base image ubuntu:22.04 4S ### 4D-STEM Python Ludmila Leroy v5 4D-STEMOpen source Base image Python 3.10 DI ### DIOPTAS Max Burian v1 XRD Base image ubuntu:22.04 GI ### GSAS-II Camilla Larsen v1 XRDOpen source Base image ubuntu:24.04 JA ### Jana2020 Oliver Harder v0 Electron crystallographyOpen source Base image ubuntu:24.04 NO ### Novena (Wine) Oliver Harder v4 4D-STEMOpen source Base image rockylinux:9 ### Job templates 3 4S ### 4D-STEM reconstruction (CoM corrected) Ludmila Leroy v4 4D-STEMReconstruction Environment 4D-STEM DECTRIS v11 4S ### 4D-STEM Single Sideband Reconstruction Oliver Harder v0 4D-STEMReconstruction Environment 4D-STEM DECTRIS v11 GI ### GSAS-II batch refinement battery Camilla Larsen v0 XRDRietveld Environment GSAS-II v1 ## Imaging & visualization 6 environments · 1 job templates Computed tomography, image analysis, 3D rendering and scientific visualization. ### Environments 6 BM ### Blender + MolecularNodes Fabian Eisenstein v2 VisualizationOpen source Base image ubuntu:24.04 FI ### Fiji (ImageJ) Camilla Larsen v0 Image analysisOpen source Base image ubuntu:22.04 ND ### nDTomo Camilla Larsen v0 CTOpen source Base image ubuntu:22.04 NJ ### nDTomo Jupyter Camilla Larsen v0 CTJupyterOpen source Base image Python 3.11 PA ### ParaView Camilla Larsen v0 VisualizationOpen source Base image ubuntu:24.04 TO ### Tomviz Camilla Larsen v0 CTVisualizationOpen source Base image ubuntu:24.04 ### Job templates 1 RM ### Render Molecule Fabian Eisenstein v5 VisualizationRendering Environment Blender + MolecularNodes v2 ## Coherent imaging 3 environments · 1 job templates Ptychography and Bragg coherent diffractive imaging, including the environments used for community workshops. ### Environments 3 CO ### Cohere4.5 Ross Harder v7 BCDIOpen source Base image Python 3.13 CP ### coherence\_ptycho\_workshop Steven Henke v1 PtychographyWorkshop Base image ubuntu:24.04 PW ### ptycho-workshop Ming Du v0 PtychographyWorkshop Base image ubuntu:24.04 ### Job templates 1 PS ### Ptycho simulate Camilla Larsen v0 PtychographySimulation Environment Python Basics Ubuntu v3 ## Computing & general 15 environments · 8 job templates Base images, desktops, Python and Jupyter stacks, GPU runtimes, data transfer and quantum-chemistry tooling — the starting points for your own environments. ### Environments 15 CU ### CUDA-12.8 Fabian Eisenstein v0 GPUOpen source Base image ubuntu:24.04 EM ### environment-modules Sagar Khavnekar v0 GeneralOpen source Base image rockylinux:9 FC ### Formosa Challenge Environment Ludmila Leroy v0 GeneralOpen source Base image ubuntu:24.04 GD ### Globus Data Transfer Fabian Eisenstein v0 Data transferOpen source Base image ubuntu:24.04 GO ### GNU Octave Tom Stoops v0 Data analysisOpen source Base image ubuntu:22.04 OS ### orca-setup Community v1 DFTOpen source Base image ubuntu:24.04 PB ### Python Basics Ludmila Leroy v2 GeneralOpen source Base image Python 3.10 PB ### Python Basics Ubuntu Camilla Larsen v4 GeneralOpen source Base image ubuntu:24.04 PU ### Python Ubuntu Template Fabian Eisenstein v1 GeneralOpen source Base image ubuntu:24.04 RL ### Rocky Linux 9 Desktop Daphne van Dijken v1 Desktop Base image rockylinux:9 RM ### rockylinux\_modules Sagar Khavnekar v5 cryo-ETOpen source Base image rockylinux:9 UD ### Ubuntu 22 Desktop Daphne van Dijken v3 Desktop Base image ubuntu:22.04 UW ### Ubuntu 22 + WineHQ Ludmila Leroy v0 DesktopWindows apps Base image ubuntu:22.04 UU ### Ubuntu 24.04 Utilities Fabian Eisenstein v3 UtilitiesOpen source Base image ubuntu:24.04 UD ### Ubuntu 24 Desktop Pascal Störzbach v3 Desktop Base image ubuntu:24.04 ### Job templates 8 1D ### 1D Data Fitting Camilla Larsen v4 FittingPython Environment Python Basics Ubuntu v3 DM ### Double Moons — ML example Ludmila Leroy v0 Machine learningTutorial Environment Python Basics Ubuntu v2 ED ### EMPIAR Download Fabian Eisenstein v0 Data transfer Environment Ubuntu 24.04 Utilities v2 FC ### Formosa CLOUD Challenge Ludmila Leroy v3 Challenge Environment Formosa Challenge Environment v0 FF ### Fourier Fun Fabian Eisenstein v5 TeachingPython Environment Python Basics Ubuntu v3 SP ### Simple python example Camilla Larsen v0 PythonGetting started Environment Python Basics Ubuntu v0 UQ ### Ultimate Question Ludmila Leroy v19 Getting started Environment Ubuntu 22 Desktop v3 UN ### Unpack Fabian Eisenstein v4 Utilities Environment Ubuntu 24.04 Utilities v1 Browse and launch in the app: [public environments](https://app.dectris.cloud/sections/library/environments/public) · [public job templates](https://app.dectris.cloud/sections/library/jobs/templates/public) **Missing something?** A DECTRIS application scientist can help bring your group’s workflow into D.LAB — [dlab@dectris.com](mailto:dlab@dectris.com)