--- title: "Job Template Index" url: "https://help.dectris.cloud/en/article/job-template-index" language: "en" last_updated: "2026-07-16T01:00:42.430Z" --- # Job Template Index Explore official DECTRIS D.LAB workflows and pre-configured templates for common scientific applications. ### **General Programming & Visualization** **Simple python examples, Machine Learning, and 3D rendering.** - [**1D Data Fitting**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019c7be3-0e3e-75a2-aa71-82c1f98f75b2)**:** Fit polynomial, exponential, and power curves to 1D data sets. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019c7be3-0e3e-75a2-aa71-82c1f98f75b2/run) [**News**](https://www.dectris.cloud/newsroom/streamlining-scientific-workflows-latest-updates-to-the-dectris-cloud-job-system) - [**Double Moons - ML example**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=01997045-c971-7810-a9ab-55723d5a2c40)**:** A Job Template that uses Python's sklearn to tackle the classification problem on the Double Moon problem framework. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/01997045-c971-7810-a9ab-55723d5a2c40/run) [**Help Page**](https://help.dectris.cloud/en/article/double-moons-machine-learning-example) - [**Fourier Fun:**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=0199c8ff-dffd-77b0-abca-038e650b486a) Generates the Fourier transform of an image and enhances it visually. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/0199c8ff-dffd-77b0-abca-038e650b486a/run) - [**Render Molecule**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=0199a3c8-7e40-7690-aeff-96536fcc02f6): Use Blender and MolecularNodes to generate a beautiful render of your protein structure! [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/0199a3c8-7e40-7690-aeff-96536fcc02f6/run) [**News**](https://www.dectris.cloud/newsroom/visualizing-molecules-in-3d-with-blender-molecularnodes-and-dectris-cloud) [**Help Page**](https://help.dectris.cloud/en/article/render-molecule-make-your-structure-look-beautiful-with-blender) - [**Simple Python Example**:](https://app.dectris.cloud/sections/library/jobs/templates/public?id=0197abb1-24f1-7c73-bcc1-8436409cb8b7) Example showing how to run your own python script via a bash-styled job template. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/0197abb1-24f1-7c73-bcc1-8436409cb8b7/run) [**Help Page**](https://help.dectris.cloud/en/article/simple-python-example) ### **Macromolecular Crystallography (MX)** **Single-crystal diffraction data processing, phasing, and refinement.** - [**Coot script example**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019cf766-120c-7e53-a547-ac20aea43119): Use coot to visualize PDB and MTZ files and generate zoomed-in views of the regions with the largest density differences. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019cf766-120c-7e53-a547-ac20aea43119/run) [**News**](https://www.dectris.cloud/newsroom/from-x-ray-data-to-refined-pdb-credible-mx-workflows-in-the-cloud) - [**DIALS example job:**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=0199d583-c3a9-7753-a8bf-371a762b0e0a) An example job for running a DIALS processing pipeline. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/0199d583-c3a9-7753-a8bf-371a762b0e0a/run) [**News**](https://www.dectris.cloud/newsroom/from-x-ray-data-to-refined-pdb-credible-mx-workflows-in-the-cloud) [**Help Page**](https://help.dectris.cloud/en/article/dials-example-job-mx-data-reduction-and-integration) - [**Fast DP job**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019bb2a6-f6c6-71c1-b5d7-ae2a6c1cfe6a)**:** Run fast\_dp command for fast data processing with XDS. Generates visual output and monitors resource usage of the node. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019bb2a6-f6c6-71c1-b5d7-ae2a6c1cfe6a/run) [**News**](https://www.dectris.cloud/newsroom/from-x-ray-data-to-refined-pdb-credible-mx-workflows-in-the-cloud) - [**Molecular Replacement MOLREP**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019ad7f5-af13-7531-ab70-12f99e54aef0)**:** Executes molecular replacement utilizing MOLREP. Usage requires one input model from the PDB and a reflection file [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019ad7f5-af13-7531-ab70-12f99e54aef0/run) [**News**](https://www.dectris.cloud/newsroom/from-x-ray-data-to-refined-pdb-credible-mx-workflows-in-the-cloud) [**Help Page**](https://help.dectris.cloud/en/article/molecular-replacement-molrep) - [**PRETTY XDS:**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=01974535-8d04-7a32-a17a-5ea101ec99b7) Runs XDS in a dataset from a given XDS.INP file and plots the results of the last CORRECT.LP table. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/01974535-8d04-7a32-a17a-5ea101ec99b7/run) [**News**](https://www.dectris.cloud/newsroom/from-x-ray-data-to-refined-pdb-credible-mx-workflows-in-the-cloud) [**Help Page**](https://help.dectris.cloud/en/article/pretty-xds) - [**Simple XDS\_PAR**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=01975702-e4df-7243-9c16-8700b9f70c3b): Run XDS\_PAR with a given XDS.INP file. The path to the data can be overwritten with a path from the file browser. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/01975702-e4df-7243-9c16-8700b9f70c3b/run) [**Help Page**](https://help.dectris.cloud/en/article/simple-xds-par) - [**REFMAC5 example job**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019cf43e-10fd-7643-b039-d9f561456132): Structural refinement with REFMAC5. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019cf43e-10fd-7643-b039-d9f561456132/run) [**News**](https://www.dectris.cloud/newsroom/from-x-ray-data-to-refined-pdb-credible-mx-workflows-in-the-cloud) - [**xia2 example job:**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=0199c411-7994-70f2-b4fb-03411a61927a) [**Run Job**](https://app.dectris.cloud/sections/analysis/jobs/templates/0199c411-7994-70f2-b4fb-03411a61927a/run) [**News**](https://www.dectris.cloud/newsroom/from-x-ray-data-to-refined-pdb-credible-mx-workflows-in-the-cloud) [**Help Page**](https://help.dectris.cloud/en/article/xia2-example-job) ### **Cryo-Electron Microscopy (Cryo-EM)** **Biological imaging, single-particle analysis, and tomography.** - [**AreTomo3**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=01978d5c-fc9f-7e41-9016-f99d2fd06290): Automatically reconstruct your cryo electron tomograms from raw tilt series movies using AreTomo3 and judge data quality by plotted metrics. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/01978d5c-fc9f-7e41-9016-f99d2fd06290/run) - [**Calculate Gain Reference**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=01978d8e-4311-7901-97bd-5301c0ec05a6)**:** Estimate the gain reference from all movies using RELION's relion\_estimate\_gain. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/01978d8e-4311-7901-97bd-5301c0ec05a6/run) [**Use case**](https://help.dectris.cloud/en/article/use-case-cryoem-single-particle-anlaysis) - [**CryoSPARC - Preprocessing**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019cf648-95fa-7df0-b251-240bfca74918)**:** Imports raw movie frames, corrects for beam-induced sample motion, and estimates the CTF. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019cf648-95fa-7df0-b251-240bfca74918/run) - [**CryoSPARC - Workflow with Reference**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019d0254-15b0-77f1-9d28-c2cd0a595537)**:** Automates the main processing steps of cryoEM data using CryoSPARC given a reference from the EMDB. The result will be a 3D map, that can be further refined manually. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019d0254-15b0-77f1-9d28-c2cd0a595537/run) - [**EMPIAR Download:**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019c9fed-431a-7803-acb1-7990def10ab8) Download a raw EM dataset from EMPIAR. ⚠️ *Note: Check hot storage limits.* [***Run Job***](https://app.dectris.cloud/sections/library/jobs/templates/019c9fed-431a-7803-acb1-7990def10ab8/run) - [**MemBrain Segmentation**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019cbce2-23da-7513-b7fe-5d033d9db4cb)**:** MemBrain v2 is a deep learning-enabled program aimed at the efficient analysis of membranes in cryo-electron tomography (cryo-ET). It provides automated membrane segmentation using a general pretrained model. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019cbce2-23da-7513-b7fe-5d033d9db4cb/run) - [**ModelAngelo with Sequence**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019ad889-8087-7703-b2f8-1fca865bdb21)**:** ModelAngelo is an automatic atomic model building program for cryoEM maps. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019ad889-8087-7703-b2f8-1fca865bdb21/run) ### **4D-STEM & Materials EM** **Scanning Transmission Electron Microscopy for materials science.** - [**4D-STEM reconstruction (CoM corr)**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=0197b1c8-9615-7861-a5f4-bbd75504b89e): 4D-STEM reconstruction with Center of Mass correction using py4DSTEM. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/0197b1c8-9615-7861-a5f4-bbd75504b89e/run) - [**4D-STEM Single Sideband Reconstruction:**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019be5c5-48e7-72f0-bf7a-c323b66f66dd) Single Sideband (SSB) reconstruction for 4D STEM datasets. More robust to defocus and better for lower doses. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019be5c5-48e7-72f0-bf7a-c323b66f66dd/run) [**News**](https://www.dectris.cloud/newsroom/4d-stem-single-sideband-reconstruction-now-available-on-dectris-cloud) ### **X-ray Diffraction & Coherent Imaging** **Powder diffraction and phase retrieval workflows.** - [**GSAS-II batch refinement battery**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=0197993e-e6b3-7b03-a45d-8edf8899c6e2): Example job showing how to batch process XRD profiles from an XRD-CT scan using GSAS-II. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/0197993e-e6b3-7b03-a45d-8edf8899c6e2/run) [**Use case**](https://help.dectris.cloud/en/article/use-case-xrd-ct-battery-analysis) [**Help page**](https://help.dectris.cloud/en/article/gsas-ii-batch-refinement-battery) - [**Ptycho simulate**:](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019a59d0-c054-72a1-8eb0-fc021a0661b4) A small script for simulating a ptychography dataset. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019a59d0-c054-72a1-8eb0-fc021a0661b4/run) ### **Utilities &** Miscellany **File management tools, event-based challenges, and more** - [**Unpack**](https://app.dectris.cloud/sections/library/jobs/templates/019ac54a-4e8b-7bd3-b6aa-136766c9d4ee/): Unpacks file archives. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019ac54a-4e8b-7bd3-b6aa-136766c9d4ee/run) - [**Formosa CLOUD Challenge**](https://app.dectris.cloud/sections/library/jobs/templates/public?id=019abb51-a244-7560-9127-62a4710fe256)**:** For the participants of the 2025 AsCA DECTRIS CLOUD workshop. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/019abb51-a244-7560-9127-62a4710fe256/run) - [**Ultimate Question**:](https://https//app.dectris.cloud/sections/library/jobs/templates/public?id=0199b9ca-a328-7d01-bd1b-8aa082b687e6) The answer to Life, the Universe, and Everything. [**Run Job**](https://app.dectris.cloud/sections/library/jobs/templates/0199b9ca-a328-7d01-bd1b-8aa082b687e6/run)